Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_513

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8881 and 8882 are separated by 938 nucleotides mRNA_513: 8881 - K09468 MSN2_4 zinc finger protein MSN2/4, at 1,221,466 to 1,223,534 8881 mRNA_514: 8882 - KOG0417 Ubiquitin-protein ligase, at 1,224,473 to 1,225,235 8882

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,220,759 + +1.1
1,220,760 - +2.4
1,221,669 - +1.5
1,221,682 + 8881 mRNA_513 0.10 +1.7
1,221,836 + 8881 mRNA_513 0.18 +0.3
1,222,396 - 8881 mRNA_513 0.45 -0.5
1,222,765 - 8881 mRNA_513 0.63 +1.1
1,222,970 + 8881 mRNA_513 0.73 +0.9
1,223,739 - +0.7
1,224,084 - -1.2
1,224,094 + -0.6
1,224,175 - -0.1
1,224,483 + -0.2

Or see this region's nucleotide sequence