Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_542

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8909 and 8910 are separated by 223 nucleotides8910 and 8911 are separated by 275 nucleotides mRNA_541: 8909 - HMMPfam-NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8)-PF05821, at 1,286,793 to 1,287,579 8909 mRNA_542: 8910 - KOG0118 FOG RRM domain, at 1,287,803 to 1,289,304 8910 mRNA_543: 8911 - K14838 NOP15 nucleolar protein 15, at 1,289,580 to 1,290,883 8911

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,286,842 - -0.2
1,287,581 - +0.0
1,287,617 - +0.6
1,287,628 - -0.3
1,287,765 - +1.1
1,289,484 - +0.8
1,289,496 - -2.5
1,289,533 - -2.0

Or see this region's nucleotide sequence