Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_572

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8939 and 8940 are separated by 312 nucleotides8940 and 8941 are separated by 197 nucleotides mRNA_571: 8939 - Hypothetical Protein, at 1,366,768 to 1,367,604 8939 mRNA_572: 8940 - Hypothetical Protein, at 1,367,917 to 1,369,757 8940 mRNA_573: 8941 - BLAST proteophosphoglycan 5 [Moniliophthora roreri MCA ..., at 1,369,955 to 1,372,100 8941

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,367,590 + +0.1
1,367,893 + +0.5
1,367,906 - +0.1
1,367,908 + -1.0
1,367,938 + +1.0
1,368,068 - -0.6
1,369,402 + 8940 mRNA_572 0.81 +0.1
1,369,860 - +0.0
1,370,167 + -0.0

Or see this region's nucleotide sequence