Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_582

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8949 and 8950 are separated by 116 nucleotides8950 and 8951 are separated by 100 nucleotides mRNA_581: 8949 - Interpro ERCC4 domain 0, at 1,389,971 to 1,392,481 8949 mRNA_582: 8950 - K02876 RP-L15, MRPL15, rplO large subunit ribosomal protein L15, at 1,392,598 to 1,393,775 8950 mRNA_583: 8951 - HMMPfam-Protein of Unknown function (DUF1690)-PF07956, at 1,393,876 to 1,394,660 8951

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,391,602 - 8949 mRNA_581 0.65 +0.4
1,391,948 + 8949 mRNA_581 0.79 +1.5
1,392,232 - +1.2
1,392,267 - -0.3
1,392,349 + -0.2
1,392,655 - +3.4
1,393,819 + -1.5
1,393,822 - -0.5
1,393,839 + -1.0
1,393,848 - -0.0
1,393,863 - +0.5
1,393,971 - 8951 mRNA_583 0.12 +0.6
1,393,981 + 8951 mRNA_583 0.13 -0.6
1,393,982 - 8951 mRNA_583 0.14 -0.3
1,394,020 - 8951 mRNA_583 0.18 +0.5
1,394,120 - 8951 mRNA_583 0.31 -0.4
1,394,397 - 8951 mRNA_583 0.66 +2.5
1,394,541 + 8951 mRNA_583 0.85 +1.7
1,394,569 - 8951 mRNA_583 0.88 -0.6

Or see this region's nucleotide sequence