Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_610

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8977 and 8978 are separated by 277 nucleotides8978 and 8979 are separated by 70 nucleotides mRNA_609: 8977 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 1,464,752 to 1,468,761 8977 mRNA_610: 8978 - K06961 KRR1 ribosomal RNA assembly protein, at 1,469,039 to 1,470,636 8978 mRNA_611: 8979 - K00490 CYP4F cytochrome P450, family 4, subfamily F, at 1,470,707 to 1,472,980 8979

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,468,044 - 8977 mRNA_609 0.82 +1.8
1,468,181 + 8977 mRNA_609 0.86 -0.2
1,468,356 - 8977 mRNA_609 0.90 +2.7
1,468,610 - +0.1
1,468,634 + +0.1
1,468,634 - -0.1
1,468,654 + +1.5
1,468,727 - +0.3
1,468,764 + -0.4
1,468,791 + +0.4
1,468,794 + -1.2
1,468,799 + +3.6
1,468,922 - +0.7
1,468,932 - -0.4
1,468,941 - +0.6
1,468,943 + -0.8
1,468,948 + -0.4
1,468,957 - +0.9
1,470,412 - 8978 mRNA_610 0.86 -1.8
1,470,798 - +0.4

Or see this region's nucleotide sequence