Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_616

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8983 and 8984 are separated by 490 nucleotides mRNA_615: 8983 - HMMPfam-Haloacid dehalogenase-like hydrolase-PF13419,SUPERFAMILY--SSF56784, at 1,478,785 to 1,480,102 8983 mRNA_616: 8984 - HMMPfam-Hsp70 protein-PF00012,SUPERFAMILY--SSF100934, at 1,480,593 to 1,481,006 8984

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,479,669 + 8983 mRNA_615 0.67 +0.5
1,480,110 + +1.0
1,480,110 + +0.4
1,480,200 - +1.0
1,481,264 + +0.0
1,481,376 - +1.8
1,481,400 - -0.9
1,481,561 + -0.2
1,481,577 + -1.9
1,481,581 + +1.7
1,481,581 + +1.3
1,481,592 + +0.9
1,481,611 - +0.2
1,481,638 - +1.4
1,481,708 + +0.4
1,481,712 - +0.7
1,481,730 - -0.6
1,481,870 + +0.7
1,481,883 + -0.4

Or see this region's nucleotide sequence