Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_638

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9005 and 9006 are separated by 470 nucleotides9006 and 9007 are separated by 794 nucleotides mRNA_637: 9005 - K02516 PRMT5, HSL7 type II protein arginine methyltransferase, at 1,529,799 to 1,532,897 9005 mRNA_638: 9006 - K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e, at 1,533,368 to 1,534,142 9006 mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1,534,937 to 1,536,294 9007

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,532,923 + +2.1
1,533,070 + +2.9
1,533,073 + +0.1
1,533,200 + +0.5
1,534,675 - +1.9
1,534,678 + -1.3
1,534,683 + +1.4
1,534,695 + +0.1
1,534,701 - -0.9
1,534,704 + -1.9
1,534,711 + +1.2
1,534,718 + +0.5
1,534,719 - -0.9
1,534,722 + +0.8
1,534,830 + +1.4
1,534,842 + -0.2
1,534,850 - +0.2
1,534,851 + +0.4
1,534,853 - -0.4
1,534,860 + +0.8
1,534,862 - -0.2
1,534,864 - +1.9
1,534,891 - +3.6
1,534,985 - +0.0
1,534,987 + -0.2
1,535,129 + 9007 mRNA_639 0.14 +0.2
1,535,136 - 9007 mRNA_639 0.15 +0.1

Or see this region's nucleotide sequence