Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_685

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9052 and 9053 are separated by 333 nucleotides9053 and 9054 are separated by 513 nucleotides mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,640,420 to 1,643,110 9052 mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500 9053 mRNA_686: 9054 - K06867 K06867 uncharacterized protein, at 1,645,014 to 1,645,916 9054

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,642,471 + 9052 mRNA_684 0.76 -0.5
1,642,562 - 9052 mRNA_684 0.80 +0.4
1,642,604 - 9052 mRNA_684 0.81 +2.3
1,642,988 - +1.5
1,643,048 + -1.0
1,643,185 - -1.5
1,643,293 - +0.6
1,644,546 + -0.5
1,644,547 + +2.3
1,644,811 - +0.4
1,644,848 + -0.9
1,644,859 + +0.0
1,644,979 - +0.3
1,645,144 - 9054 mRNA_686 0.14 -1.5
1,645,437 - 9054 mRNA_686 0.47 -0.4

Or see this region's nucleotide sequence