Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_717

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9084 and 9085 are separated by 447 nucleotides9085 and 9086 are separated by 287 nucleotides mRNA_716: 9084 - K01663 HIS7 glutamine amidotransferase / cyclase, at 1,709,868 to 1,711,961 9084 mRNA_717: 9085 - K00058 serA, PHGDH D-3-phosphoglycerate dehydrogenase, at 1,712,409 to 1,714,095 9085 mRNA_718: 9086 - KOG2776 Metallopeptidase, at 1,714,383 to 1,716,364 9086

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,712,003 + +0.0
1,712,140 - -0.5
1,712,162 - -1.3
1,712,186 - -0.1
1,712,199 + +1.2
1,712,283 + -0.4
1,712,740 - 9085 mRNA_717 0.20 -0.3
1,714,067 + +0.1
1,714,189 + -2.5
1,714,202 + -0.5
1,714,216 - -0.3
1,714,216 + +1.6
1,714,228 + +0.5
1,714,247 - -2.4
1,714,254 + +0.5
1,714,263 - +0.6
1,714,505 - -0.3
1,714,513 - -0.4
1,714,652 - 9086 mRNA_718 0.14 -1.4
1,714,666 + 9086 mRNA_718 0.14 +0.5

Or see this region's nucleotide sequence