Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_781

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9148 and 9149 are separated by 558 nucleotides9149 and 9150 are separated by 551 nucleotides mRNA_780: 9148 - K15172 SUPT5H, SPT5 transcription elongation factor SPT5, at 1,855,751 to 1,860,182 9148 mRNA_781: 9149 - K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e, at 1,860,741 to 1,861,371 9149 mRNA_782: 9150 - K02917 RP-L35Ae, RPL35A large subunit ribosomal protein L35Ae, at 1,861,923 to 1,862,958 9150

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,860,239 + +1.5
1,860,382 + +0.8
1,861,688 - +2.0
1,861,690 + -0.1

Or see this region's nucleotide sequence