Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_790

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9157 and 9158 are separated by 573 nucleotides9158 and 9159 are separated by 203 nucleotides mRNA_789: 9157 - K14459 HEX hexosaminidase, at 1,873,668 to 1,877,392 9157 mRNA_790: 9158 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 1,877,966 to 1,880,180 9158 mRNA_791: 9159 - HMMPfam-Svf1-like-PF08622,SUPERFAMILY--SSF159245, at 1,880,384 to 1,881,933 9159

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,877,135 + +0.8
1,877,254 + +0.4
1,877,291 + -0.9
1,877,399 + +0.1
1,877,452 - +1.8
1,877,718 - +0.0
1,877,740 + +2.4
1,877,874 - -0.0
1,877,879 + +0.6
1,877,880 + +1.9
1,877,880 + -0.1
1,877,889 + +0.8
1,879,038 - 9158 mRNA_790 0.48 -0.2
1,879,496 + 9158 mRNA_790 0.69 +0.3
1,879,753 + 9158 mRNA_790 0.81 +2.3
1,879,787 + 9158 mRNA_790 0.82 +0.8
1,879,791 + 9158 mRNA_790 0.82 +0.6
1,880,359 - +0.6

Or see this region's nucleotide sequence