Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_804

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9172 and 9173 are separated by 434 nucleotides mRNA_804: 9172 - K17794 TIM23 mitochondrial import inner membrane translocase subunit TIM23, at 1,911,921 to 1,912,961 9172 mRNA_805: 9173 - K09191 GTF3A general transcription factor IIIA, at 1,913,396 to 1,915,422 9173

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,910,928 - +0.2
1,910,932 + -1.0
1,910,932 + +0.4
1,910,938 + +0.4
1,910,942 + +1.1
1,910,988 + +2.9
1,911,044 - +0.3
1,911,049 - +0.7
1,911,058 + -1.5
1,911,066 + +0.4
1,911,066 + +0.5
1,911,070 + +0.4
1,911,085 + +1.4
1,911,089 + +2.6
1,911,095 + -0.5
1,911,195 - +2.5
1,911,208 - +1.0
1,911,215 + -0.4
1,911,219 - +1.5
1,911,363 - -0.8
1,911,364 + +0.8
1,911,368 - +0.1
1,911,372 - -1.8
1,911,375 + +1.8
1,911,375 + +0.4
1,911,378 - -0.9
1,911,380 - +0.5
1,911,381 + +0.0
1,911,382 - -0.7
1,911,383 + -0.5
1,911,383 + +1.4
1,911,383 - +0.9
1,911,386 + -1.4
1,911,387 - -1.2
1,911,395 - +0.6
1,911,398 + +0.1
1,911,398 + +0.7
1,911,399 + +0.1
1,911,424 + +1.0
1,911,484 - +0.0
1,911,491 + -1.0
1,911,493 + +0.2
1,911,505 + -0.7
1,911,506 + -0.0
1,911,506 + +0.2
1,911,507 + -1.0
1,911,507 - -0.6
1,911,527 + +1.0
1,911,544 + +1.0
1,911,554 + +0.8
1,911,570 - -0.2
1,911,574 + -0.4
1,911,580 + +0.9
1,911,582 + +1.2
1,911,588 - -0.1
1,911,588 - +4.6
1,911,589 + -0.3
1,911,600 + +0.5
1,911,608 - -0.5
1,911,615 + -0.7
1,911,617 - +1.0
1,911,620 + -0.6
1,911,623 + +0.7
1,911,627 + +0.5
1,911,632 - -0.9
1,911,637 + -0.9
1,911,644 + -0.2
1,911,645 + -0.4
1,911,656 + +0.2
1,911,657 + -1.4
1,911,669 + +1.1
1,911,684 + +0.3
1,911,704 + +0.7
1,911,719 + +0.5
1,911,726 + -0.7
1,911,726 - +0.5
1,911,729 - +0.0
1,911,753 + -0.1
1,911,793 + +0.4
1,911,801 + +0.3
1,911,836 + +0.9
1,911,840 - -0.1

Or see this region's nucleotide sequence