Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_812

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9179 and 9180 are separated by 472 nucleotides9180 and 9181 are separated by 261 nucleotides mRNA_811: 9179 - Interpro Glycosyl-transferase for dystroglycan, at 1,929,114 to 1,931,965 9179 mRNA_812: 9180 - K00474 TMLHE trimethyllysine dioxygenase, at 1,932,438 to 1,934,306 9180 mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1,934,568 to 1,937,031 9181

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,932,103 - -0.6
1,934,341 + +1.0
1,934,447 - +0.3
1,934,614 + -0.9
1,935,085 - 9181 mRNA_813 0.21 +0.1

Or see this region's nucleotide sequence