Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_915

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9282 and 9283 are separated by 306 nucleotides mRNA_914: 9282 - K10903 HUS1 HUS1 checkpoint protein, at 2,182,146 to 2,183,559 9282 mRNA_915: 9283 - K01950 E6.3.5.1, NADSYN1, QNS1, nadE NAD+ synthase (glutamine-hydrolysing), at 2,183,866 to 2,186,903 9283

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,182,896 - 9282 mRNA_914 0.53 -1.5
2,183,333 + 9282 mRNA_914 0.84 -0.1
2,183,689 + +0.0
2,183,816 + -1.7
2,184,335 - 9283 mRNA_915 0.15 -2.7
2,187,154 + +2.3
2,187,188 - +2.9
2,187,582 - +0.0
2,187,650 + +0.9
2,187,701 - +0.2
2,187,793 + +0.3
2,187,814 + +2.2

Or see this region's nucleotide sequence