Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_956

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9323 and 9324 are separated by 297 nucleotides9324 and 9325 are separated by 939 nucleotides mRNA_955: 9323 - Hypothetical Protein, at 58,639 to 63,739 9323 mRNA_956: 9324 - KOG2466 Uridine permease/thiamine transporter/allantoin transport, at 64,037 to 66,119 9324 mRNA_957: 9325 - K07160 K07160 UPF0271 protein, at 67,059 to 67,959 9325

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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63,059 + 9323 mRNA_955 0.87 -0.2
63,068 - 9323 mRNA_955 0.87 -0.7
63,206 - 9323 mRNA_955 0.90 +0.8
63,260 + +0.7
63,474 + -1.6
63,856 - -0.7
64,193 + +0.2
64,227 - +2.2
64,494 + 9324 mRNA_956 0.22 -0.3
64,958 + 9324 mRNA_956 0.44 +0.5
64,964 + 9324 mRNA_956 0.45 +2.0
65,317 - 9324 mRNA_956 0.61 +0.2
65,494 + 9324 mRNA_956 0.70 +0.7
65,686 - 9324 mRNA_956 0.79 +1.6
65,904 - 9324 mRNA_956 0.90 -0.2
65,921 + +1.1
65,995 - +1.0
66,238 + +2.9
66,268 + -0.9
66,282 - -1.4
66,323 + +0.8
66,333 - +2.1
66,359 - +0.8
66,367 + +2.1
66,375 - +0.2
66,382 + +2.1
66,418 - +0.2
66,676 - -0.2
66,676 + +0.3
66,693 + +0.1
66,701 - +0.5
66,812 + +1.8
66,836 + -0.3
66,842 - +0.1
66,891 + +0.1
66,892 - +1.8
66,962 - -1.0
66,972 + +0.1
67,008 + -0.4

Or see this region's nucleotide sequence