Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_970

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9337 and 9338 are separated by 177 nucleotides mRNA_969: 9337 - Hypothetical Protein, at 99,924 to 100,860 9337 mRNA_970: 9338 - Hypothetical Protein, at 101,038 to 101,526 9338

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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100,148 + 9337 mRNA_969 0.24 +0.1
100,163 + 9337 mRNA_969 0.26 -2.1
100,421 + 9337 mRNA_969 0.53 +0.6
101,027 - +1.5
101,032 + +3.3
101,033 + +2.5
101,579 + -0.0
101,879 - -0.2
101,902 + +0.4
102,324 - -0.3
102,334 + +1.6
102,337 + -0.0
102,369 + +0.4
102,388 - +0.6
102,392 + -1.3
102,392 + +1.2
102,396 - -0.9
102,396 + +0.5
102,398 - +0.4
102,399 + -1.6
102,400 - -1.5
102,401 - +1.3
102,403 + -0.9
102,403 + +0.4
102,404 - +0.6
102,404 - +1.9
102,405 + +1.1
102,412 + +0.9
102,473 - +0.2
102,474 + +2.2
102,476 - +0.2

Or see this region's nucleotide sequence