Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_971

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9339 and 9340 are separated by 427 nucleotides mRNA_971: 9339 - KOG2262 Sexual differentiation process protein ISP4, at 104,337 to 107,412 9339 mRNA_972: 9340 - Hypothetical Protein, at 107,840 to 108,806 9340

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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103,931 + +0.5
104,023 - -1.5
104,064 - -2.2
104,075 - +2.0
104,076 + +2.7
104,080 + -0.6
104,089 + +1.7
104,090 + +0.6
104,093 - +0.5
104,098 - -0.2
104,111 - -0.4
104,119 + +2.3
104,126 + +1.4
104,185 + +0.6
104,239 + -0.2
104,254 - +0.1
104,271 + +0.0
104,284 - -2.3
104,307 + +1.2
104,335 - -0.5
104,373 + -2.3
104,373 + -0.4
104,376 - +0.4
104,380 + -0.5
104,382 + -1.2
104,386 + +2.3
104,416 + +2.6
104,433 - -2.4
104,442 + -0.8
104,445 + -0.4
104,487 + +0.8
104,546 - +1.9
104,696 + 9339 mRNA_971 0.12 -0.3
104,833 + 9339 mRNA_971 0.16 -0.3
104,834 + 9339 mRNA_971 0.16 -0.4
104,837 - 9339 mRNA_971 0.16 +0.3
104,856 + 9339 mRNA_971 0.17 +1.4
104,860 + 9339 mRNA_971 0.17 +1.1
104,925 - 9339 mRNA_971 0.19 +1.6
104,979 + 9339 mRNA_971 0.21 +1.6
105,012 + 9339 mRNA_971 0.22 -1.0
105,062 + 9339 mRNA_971 0.24 +0.4
105,096 - 9339 mRNA_971 0.25 +0.8
105,129 - 9339 mRNA_971 0.26 +0.2
105,517 - 9339 mRNA_971 0.38 +0.3
105,580 + 9339 mRNA_971 0.40 +0.5
105,584 + 9339 mRNA_971 0.41 +0.4
105,611 + 9339 mRNA_971 0.41 -0.3
105,638 - 9339 mRNA_971 0.42 +0.4
105,705 - 9339 mRNA_971 0.44 -0.8
105,713 + 9339 mRNA_971 0.45 -0.6
105,762 + 9339 mRNA_971 0.46 +0.9
106,020 - 9339 mRNA_971 0.55 +0.0
106,238 - 9339 mRNA_971 0.62 -0.3
106,267 + 9339 mRNA_971 0.63 +1.0
106,281 + 9339 mRNA_971 0.63 +0.1
106,303 + 9339 mRNA_971 0.64 -1.3
106,545 + 9339 mRNA_971 0.72 -0.7
106,567 + 9339 mRNA_971 0.72 +0.6
106,578 - 9339 mRNA_971 0.73 +0.3
106,637 - 9339 mRNA_971 0.75 -0.4
106,754 - 9339 mRNA_971 0.79 +0.3
106,770 - 9339 mRNA_971 0.79 +0.3
106,892 + 9339 mRNA_971 0.83 -0.4
107,017 + 9339 mRNA_971 0.87 +1.1
107,023 - 9339 mRNA_971 0.87 -0.2
107,031 + 9339 mRNA_971 0.88 -0.9
107,040 + 9339 mRNA_971 0.88 +0.7
107,122 + +1.3
107,184 - -0.8
107,213 + +0.3
107,218 - +2.4
107,233 + +0.1
107,266 + -0.1
107,327 - +0.4
107,340 - -0.2
107,345 + -0.6
107,352 + +1.3
107,363 - -0.4
107,370 + -0.9
107,430 + +0.6
107,461 - +0.9
107,464 - +0.1
107,471 + +1.3
107,483 - -0.1
107,488 - +0.3
107,490 + -0.8
107,491 - +0.9
107,499 - +1.4
107,499 - +1.2
107,499 - -0.1
107,500 + +0.5
107,508 - -0.2
107,509 + -0.5
107,515 + +0.1
107,515 - -0.7
107,519 - +1.8
107,522 - +2.5
107,523 + -0.0
107,524 + -0.6
107,526 + +2.0
107,535 + -0.6
107,537 + +0.8
107,540 - +0.0
107,548 + -0.6
107,548 - +0.1
107,554 + -0.1
107,559 - +0.4
107,560 + +1.2
107,560 - +1.0
107,567 + +2.0
107,571 - -1.2
107,576 - +0.1
107,577 + -0.2
107,581 - +0.2
107,585 - +0.2
107,585 - +0.7
107,585 + +0.6
107,585 + +0.5
107,586 + -0.4
107,640 + +0.1
107,645 - -1.1
107,653 + -0.5
107,674 - +0.5
107,683 - -1.0
107,687 - -1.0
107,690 - +1.9
107,691 + -1.1
107,693 - +0.1
107,693 - +0.7
107,698 + +0.1
107,700 - +1.8
107,712 + -0.0
107,713 - +1.5
107,714 - -0.1
107,717 - -0.3
107,719 - +0.1
107,720 - +0.2
107,721 - +1.2
107,729 + +0.3
107,730 - +0.2
107,731 + +1.6
107,738 + -1.5
107,739 + +1.4
107,739 + -0.3
107,756 - +0.6
107,763 + +0.1
107,799 + +0.2
107,804 + +1.0
107,804 - +0.0
107,808 + +0.9
107,816 - +0.5
107,838 - -0.3
107,838 - +0.1
107,853 + +2.1
107,865 + +0.2
107,866 + -0.5
107,866 + -0.7
107,882 - -0.8
107,883 - +0.2
107,891 - +0.4
107,895 - +1.9
107,896 + +1.0
107,897 - +2.2
107,898 + -1.1
107,898 + +0.2
107,907 - +1.0
107,909 - +0.4
107,909 - -1.0
107,910 + -2.0
107,910 + +0.3
107,913 + -0.3
107,914 - -0.5
107,914 - +2.2
107,921 + -1.2
107,923 - +2.0
107,928 + -0.3
107,929 - -0.2
107,933 - -0.1
107,943 + 9340 mRNA_972 0.11 +1.4
107,948 - 9340 mRNA_972 0.11 -1.0
107,951 - 9340 mRNA_972 0.11 +1.4
107,954 + 9340 mRNA_972 0.12 -0.4
107,958 - 9340 mRNA_972 0.12 +0.9
107,962 + 9340 mRNA_972 0.13 -0.3
107,966 + 9340 mRNA_972 0.13 +0.6
107,978 + 9340 mRNA_972 0.14 +0.0
107,980 - 9340 mRNA_972 0.14 +0.7
108,046 + 9340 mRNA_972 0.21 +0.9
108,065 + 9340 mRNA_972 0.23 -1.9
108,071 - 9340 mRNA_972 0.24 -0.3
108,084 + 9340 mRNA_972 0.25 -0.5
108,089 + 9340 mRNA_972 0.26 +1.6
108,099 - 9340 mRNA_972 0.27 -0.4
108,114 + 9340 mRNA_972 0.28 +2.3
108,117 - 9340 mRNA_972 0.29 +0.3
108,127 - 9340 mRNA_972 0.30 -0.2
108,128 - 9340 mRNA_972 0.30 -2.6
108,131 + 9340 mRNA_972 0.30 +0.1
108,131 + 9340 mRNA_972 0.30 +1.1
108,139 - 9340 mRNA_972 0.31 +0.2
108,145 + 9340 mRNA_972 0.32 +0.3
108,147 - 9340 mRNA_972 0.32 +0.3
108,166 + 9340 mRNA_972 0.34 +1.6
108,169 + 9340 mRNA_972 0.34 +1.5
108,192 - 9340 mRNA_972 0.36 +0.9
108,197 + 9340 mRNA_972 0.37 +1.7
108,215 + 9340 mRNA_972 0.39 +0.6
108,220 + 9340 mRNA_972 0.39 +0.5
108,228 - 9340 mRNA_972 0.40 -1.5
108,231 - 9340 mRNA_972 0.40 -0.1
108,233 - 9340 mRNA_972 0.41 +0.8
108,233 + 9340 mRNA_972 0.41 +1.0
108,234 - 9340 mRNA_972 0.41 +0.5
108,247 - 9340 mRNA_972 0.42 +0.4
108,248 + 9340 mRNA_972 0.42 +0.5
108,250 + 9340 mRNA_972 0.42 -1.3
108,252 - 9340 mRNA_972 0.43 +1.2
108,254 + 9340 mRNA_972 0.43 -2.6
108,257 - 9340 mRNA_972 0.43 +1.2
108,259 + 9340 mRNA_972 0.43 +0.2
108,261 - 9340 mRNA_972 0.44 +0.5
108,265 - 9340 mRNA_972 0.44 -0.9
108,266 + 9340 mRNA_972 0.44 -0.9
108,270 - 9340 mRNA_972 0.44 +0.3
108,270 - 9340 mRNA_972 0.44 -0.0
108,271 + 9340 mRNA_972 0.45 -0.3
108,271 + 9340 mRNA_972 0.45 -1.9
108,273 - 9340 mRNA_972 0.45 +0.3
108,286 - 9340 mRNA_972 0.46 -0.7
108,293 - 9340 mRNA_972 0.47 -0.2
108,297 - 9340 mRNA_972 0.47 +1.6
108,298 - 9340 mRNA_972 0.47 -0.2
108,298 + 9340 mRNA_972 0.47 -0.0
108,298 + 9340 mRNA_972 0.47 -0.5
108,304 - 9340 mRNA_972 0.48 +0.9
108,314 - 9340 mRNA_972 0.49 -2.1
108,328 + 9340 mRNA_972 0.50 +0.5
108,338 + 9340 mRNA_972 0.51 -0.0
108,357 + 9340 mRNA_972 0.53 +0.4
108,378 + 9340 mRNA_972 0.56 +0.2
108,378 - 9340 mRNA_972 0.56 -1.7
108,390 + 9340 mRNA_972 0.57 +0.1
108,398 - 9340 mRNA_972 0.58 +0.2
108,399 - 9340 mRNA_972 0.58 +0.5
108,400 - 9340 mRNA_972 0.58 -1.5
108,409 + 9340 mRNA_972 0.59 +0.5

Or see this region's nucleotide sequence