Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1039

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9406 and 9407 are separated by 115 nucleotides9407 and 9408 are separated by 160 nucleotides mRNA_1038: 9406 - HMMPfam-Protein of unknown function (DUF2034)-PF10356, at 255,756 to 256,586 9406 mRNA_1039: 9407 - K18723 GLE1 nucleoporin GLE1, at 256,702 to 258,919 9407 mRNA_1040: 9408 - HMMPfam-NADH(P)-binding-PF13460,SUPERFAMILY--SSF51735, at 259,080 to 260,427 9408

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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255,885 - 9406 mRNA_1038 0.16 +0.9
256,353 - 9406 mRNA_1038 0.72 +0.8
256,457 + 9406 mRNA_1038 0.84 -0.9
256,460 - 9406 mRNA_1038 0.85 +0.2
256,507 - +0.9
256,638 - -2.2
256,644 - -0.7
256,659 + -0.2
256,661 + +0.6
256,661 - -1.8
258,975 - -1.2
259,067 - +0.7
259,186 - +1.0
259,704 - 9408 mRNA_1040 0.46 -1.9
259,709 - 9408 mRNA_1040 0.47 +0.6
259,845 - 9408 mRNA_1040 0.57 -0.5

Or see this region's nucleotide sequence