Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1053

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9420 and 9421 are separated by 244 nucleotides9421 and 9422 are separated by 112 nucleotides mRNA_1052: 9420 - K10896 FANCM fanconi anemia group M protein, at 282,030 to 286,830 9420 mRNA_1053: 9421 - KOG3856 Uncharacterized conserved protein, at 287,075 to 287,902 9421 mRNA_1054: 9422 - K09419 HSFF heat shock transcription factor, other eukaryote, at 288,015 to 290,756 9422

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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286,140 - 9420 mRNA_1052 0.86 -0.7
286,200 + 9420 mRNA_1052 0.87 +2.9
286,212 + 9420 mRNA_1052 0.87 +0.7
286,321 + 9420 mRNA_1052 0.89 -2.4
286,664 - +1.3
286,738 - +1.0
286,768 - +0.9
286,813 - +2.3
286,946 + +0.4
287,085 + -1.0
287,966 + +0.3

Or see this region's nucleotide sequence