Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1060

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9427 and 9428 are separated by 243 nucleotides9428 and 9429 are separated by 734 nucleotides mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300,871 to 301,562 9427 mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301,806 to 307,768 9428 mRNA_1061: 9429 - BLAST heat shock 70 kDa protein 12A [Rhizoctonia solani AG-..., at 308,503 to 311,284 9429

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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300,955 - 9427 mRNA_1059 0.12 +1.0
300,969 - 9427 mRNA_1059 0.14 +0.2
300,971 + 9427 mRNA_1059 0.14 +0.2
301,129 - 9427 mRNA_1059 0.37 -1.6
301,132 + 9427 mRNA_1059 0.38 -0.4
301,542 + +1.0
301,545 - +0.6
301,559 - +1.8
301,566 + +0.1
301,566 + +0.2
301,566 + -1.3
301,574 + -2.1
301,582 + +1.2
301,582 + +2.8
301,582 + -1.3
301,582 + -0.8
301,585 + +0.3
301,587 + -1.9
301,589 - -0.6
301,737 - -0.8
301,821 - +0.2
302,015 + -0.6
302,097 - -1.7
302,146 - +0.1
302,152 + +0.3
302,221 - -1.1
302,479 + 9428 mRNA_1060 0.11 +1.3
302,506 - 9428 mRNA_1060 0.12 +1.0
302,510 + 9428 mRNA_1060 0.12 -2.1
302,554 + 9428 mRNA_1060 0.13 +2.2
302,604 - 9428 mRNA_1060 0.13 -1.4
302,621 + 9428 mRNA_1060 0.14 -0.2
302,718 + 9428 mRNA_1060 0.15 +0.0
302,765 - 9428 mRNA_1060 0.16 +0.2
302,773 + 9428 mRNA_1060 0.16 +0.2
303,025 - 9428 mRNA_1060 0.20 +1.5
303,039 + 9428 mRNA_1060 0.21 -0.4
303,056 + 9428 mRNA_1060 0.21 +0.3
303,190 - 9428 mRNA_1060 0.23 +0.2
303,196 - 9428 mRNA_1060 0.23 -0.7
303,260 + 9428 mRNA_1060 0.24 +2.5
303,416 + 9428 mRNA_1060 0.27 +0.8
303,458 + 9428 mRNA_1060 0.28 +1.7
303,626 - 9428 mRNA_1060 0.31 +0.7
303,663 - 9428 mRNA_1060 0.31 +1.9
303,663 - 9428 mRNA_1060 0.31 +1.1
303,663 - 9428 mRNA_1060 0.31 -0.8
303,663 - 9428 mRNA_1060 0.31 +1.5
303,663 - 9428 mRNA_1060 0.31 +0.6
303,663 - 9428 mRNA_1060 0.31 -0.5
303,669 + 9428 mRNA_1060 0.31 -0.5
303,669 + 9428 mRNA_1060 0.31 +1.8
303,669 + 9428 mRNA_1060 0.31 -0.6
303,669 + 9428 mRNA_1060 0.31 +0.2
303,768 - 9428 mRNA_1060 0.33 -0.5
303,795 - 9428 mRNA_1060 0.33 +0.2
303,859 + 9428 mRNA_1060 0.34 +3.0
303,900 - 9428 mRNA_1060 0.35 +1.2
303,985 + 9428 mRNA_1060 0.37 -1.9
304,171 + 9428 mRNA_1060 0.40 -0.2
304,174 - 9428 mRNA_1060 0.40 +0.3
304,289 + 9428 mRNA_1060 0.42 -0.1
304,373 + 9428 mRNA_1060 0.43 +0.4
304,651 - 9428 mRNA_1060 0.48 +1.9
304,854 - 9428 mRNA_1060 0.51 -0.3
304,971 + 9428 mRNA_1060 0.53 +1.5
305,009 + 9428 mRNA_1060 0.54 +0.8
305,110 - 9428 mRNA_1060 0.55 -2.0
305,119 - 9428 mRNA_1060 0.56 +1.6
305,141 - 9428 mRNA_1060 0.56 -1.4
305,351 + 9428 mRNA_1060 0.59 +0.1
305,357 - 9428 mRNA_1060 0.60 -0.6
305,391 - 9428 mRNA_1060 0.60 +0.2
305,394 - 9428 mRNA_1060 0.60 +0.4
305,603 - 9428 mRNA_1060 0.64 +0.9
305,819 + 9428 mRNA_1060 0.67 +0.9
306,013 + 9428 mRNA_1060 0.71 +0.4
306,152 - 9428 mRNA_1060 0.73 +1.1
306,193 - 9428 mRNA_1060 0.74 +0.5
306,248 + 9428 mRNA_1060 0.74 +0.7
306,673 + 9428 mRNA_1060 0.82 +0.6
306,834 - 9428 mRNA_1060 0.84 +2.1
307,274 - -2.6
307,284 + +1.6
307,322 - +2.0
307,550 - -0.3
307,837 - +0.3
307,850 + -0.5
307,861 - +0.4
307,965 - -0.2
308,021 - +1.7
308,152 - +1.2
308,283 + -0.6
308,334 + -0.9
308,619 - -0.3

Or see this region's nucleotide sequence