Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1079

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9446 and 9447 are separated by 309 nucleotides9447 and 9448 are separated by 269 nucleotides mRNA_1078: 9446 - K00784 rnz ribonuclease Z, at 359,854 to 363,039 9446 mRNA_1079: 9447 - HMMPfam-Frag1/DRAM/Sfk1 family-PF10277, at 363,349 to 364,713 9447 mRNA_1080: 9448 - Hypothetical Protein, at 364,983 to 366,147 9448

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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363,094 - +0.7
363,097 - +0.5
363,108 + -0.7
363,131 - -1.7
363,145 + +2.7
363,146 + -0.6
363,156 + -0.5
363,288 + +0.4
363,601 + 9447 mRNA_1079 0.18 +0.7
363,667 + 9447 mRNA_1079 0.23 -0.9
363,762 + 9447 mRNA_1079 0.30 +2.4
363,769 - 9447 mRNA_1079 0.31 +0.3
363,772 + 9447 mRNA_1079 0.31 +0.0
363,982 + 9447 mRNA_1079 0.46 +0.1
364,029 + 9447 mRNA_1079 0.50 -0.7
364,030 - 9447 mRNA_1079 0.50 -0.8
364,379 - 9447 mRNA_1079 0.75 +1.8
364,603 + +0.6
364,938 - -0.2
365,063 + +1.9
365,322 + 9448 mRNA_1080 0.29 +1.5

Or see this region's nucleotide sequence