Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1113

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9480 and 9481 are separated by 170 nucleotides9481 and 9482 are separated by 250 nucleotides mRNA_1112: 9480 - Interpro Protein of unknown function (DUF3602) Protein of unknown function (DUF3602) 0, at 433,263 to 434,310 9480 mRNA_1113: 9481 - HMMPfam-Protein of unknown function (DUF3602)-PF12223, at 434,481 to 435,131 9481 mRNA_1114: 9482 - KOG1396 Uncharacterized conserved protein, at 435,382 to 439,006 9482

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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433,492 - 9480 mRNA_1112 0.22 -1.2
433,537 + 9480 mRNA_1112 0.26 +0.7
433,541 - 9480 mRNA_1112 0.27 -0.6
433,687 + 9480 mRNA_1112 0.40 +0.0
433,688 - 9480 mRNA_1112 0.41 -1.2
433,697 + 9480 mRNA_1112 0.41 +0.7
433,705 - 9480 mRNA_1112 0.42 +0.1
434,118 - 9480 mRNA_1112 0.82 +2.1
434,238 + +0.4
434,407 - +0.7
434,419 - +2.5
434,447 + -0.5
434,454 + +0.6
434,459 + -0.4
434,621 - 9481 mRNA_1113 0.22 +1.2
434,623 - 9481 mRNA_1113 0.22 +1.0
434,769 + 9481 mRNA_1113 0.44 +0.5
435,044 + 9481 mRNA_1113 0.86 -0.3
435,518 + +1.1
435,725 - -2.0
435,900 - 9482 mRNA_1114 0.14 +2.1

Or see this region's nucleotide sequence