Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1122

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9489 and 9490 are separated by 286 nucleotides9490 and 9491 are separated by 271 nucleotides mRNA_1121: 9489 - K05389 KCNKF potassium channel subfamily K, other eukaryote, at 450,183 to 453,173 9489 mRNA_1122: 9490 - BLAST glycoside hydrolase family 28 protein [Tulasnella cal..., at 453,460 to 456,260 9490 mRNA_1123: 9491 - K00078 DHDH dihydrodiol dehydrogenase / D-xylose 1-dehydrogenase (NADP), at 456,532 to 457,918 9491

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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452,812 - 9489 mRNA_1121 0.88 +0.9
453,074 - -0.1
453,082 + +1.2
453,113 - +1.3
453,228 + -0.3
453,243 - +0.1
453,244 + +0.1
453,250 + +1.2
453,252 + +2.7
453,366 + -1.1
453,367 - +3.2
453,368 + -0.2
453,368 - +0.3
453,372 - -1.7
453,372 + +0.2
453,373 + +0.8
453,375 + +0.8
453,375 + -0.4
453,377 - +1.3
453,378 + -0.5
453,378 - -2.4
453,384 + -1.1
453,391 + +1.8
453,411 + -1.1
453,548 + +1.1
453,600 + +1.3
453,649 + +0.0
453,667 - +1.2
453,814 - 9490 mRNA_1122 0.13 +0.6
453,816 + 9490 mRNA_1122 0.13 -0.2
453,819 - 9490 mRNA_1122 0.13 +0.4
453,822 - 9490 mRNA_1122 0.13 -0.2
453,829 + 9490 mRNA_1122 0.13 -0.7
453,833 - 9490 mRNA_1122 0.13 +0.8
453,836 + 9490 mRNA_1122 0.13 +0.2
453,968 - 9490 mRNA_1122 0.18 -1.8
453,973 - 9490 mRNA_1122 0.18 +0.7
453,979 + 9490 mRNA_1122 0.19 -0.3
453,999 + 9490 mRNA_1122 0.19 +0.5
454,007 + 9490 mRNA_1122 0.20 +1.9
454,014 + 9490 mRNA_1122 0.20 -0.8
454,016 - 9490 mRNA_1122 0.20 +1.2
454,027 - 9490 mRNA_1122 0.20 +2.5
454,032 + 9490 mRNA_1122 0.20 -1.7
454,083 - 9490 mRNA_1122 0.22 +0.3
454,470 + 9490 mRNA_1122 0.36 +2.0
454,617 + 9490 mRNA_1122 0.41 -0.3
454,873 - 9490 mRNA_1122 0.50 -0.9
454,884 - 9490 mRNA_1122 0.51 +0.8
455,227 + 9490 mRNA_1122 0.63 +0.2
455,294 - 9490 mRNA_1122 0.65 +1.7
455,311 - 9490 mRNA_1122 0.66 -1.0
455,316 - 9490 mRNA_1122 0.66 +0.3
455,448 + 9490 mRNA_1122 0.71 -0.1
455,629 + 9490 mRNA_1122 0.77 +0.2
455,726 - 9490 mRNA_1122 0.81 +0.0
455,751 + 9490 mRNA_1122 0.82 +0.5
456,001 + -1.3
456,020 - +1.5
456,149 + +0.9
456,214 - +2.1
456,545 - +0.2
456,625 - +0.1
456,781 - 9491 mRNA_1123 0.18 +0.1
456,866 + 9491 mRNA_1123 0.24 +0.6
456,899 + 9491 mRNA_1123 0.26 +0.6

Or see this region's nucleotide sequence