Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1136

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9503 and 9504 are separated by 164 nucleotides9504 and 9505 are separated by 419 nucleotides mRNA_1135: 9503 - K04532 NAE1, APPBP1 amyloid beta precursor protein binding protein 1, at 489,828 to 492,159 9503 mRNA_1136: 9504 - Hypothetical Protein, at 492,324 to 493,013 9504 mRNA_1137: 9505 - KOG2363 Protein subunit of nuclear ribonuclease P (RNase P), at 493,433 to 494,833 9505

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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492,299 + +1.4
492,332 - +1.1
492,387 + -0.2
492,480 + 9504 mRNA_1136 0.23 +0.4
492,494 - 9504 mRNA_1136 0.25 -0.1
492,572 - 9504 mRNA_1136 0.36 +1.1
492,591 + 9504 mRNA_1136 0.39 +0.1
492,744 + 9504 mRNA_1136 0.61 -0.3
492,831 + 9504 mRNA_1136 0.73 +0.5
492,832 - 9504 mRNA_1136 0.74 +1.2
492,860 + 9504 mRNA_1136 0.78 +0.2
493,010 + +2.0
493,029 + +0.7

Or see this region's nucleotide sequence