Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1161

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9528 and 9529 are separated by 444 nucleotides9529 and 9530 are separated by 403 nucleotides mRNA_1160: 9528 - KOG4159 Predicted E3 ubiquitin ligase, at 540,916 to 543,538 9528 mRNA_1161: 9529 - K03028 PSMD2, RPN1 26S proteasome regulatory subunit N1, at 543,983 to 547,395 9529 mRNA_1162: 9530 - SUPERFAMILY--SSF52047, at 547,799 to 548,923 9530

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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542,984 + 9528 mRNA_1160 0.79 +0.6
543,198 + 9528 mRNA_1160 0.87 -1.1
543,806 + +2.4
543,829 + +0.6
543,830 - -0.2
543,836 - +0.8
543,844 - +0.1
543,845 + +1.9
543,958 - +1.1
543,978 + +2.5
547,492 + +1.2
547,499 + +1.3
547,535 + -0.5
547,638 + +0.9
547,679 + -1.8
547,791 - +0.5
547,935 + 9530 mRNA_1162 0.12 +0.4
548,130 - 9530 mRNA_1162 0.29 +1.0
548,353 + 9530 mRNA_1162 0.49 -0.5

Or see this region's nucleotide sequence