Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1197

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9565 and 9566 are separated by 228 nucleotides mRNA_1197: 9565 - KOG2385 Uncharacterized conserved protein, at 628,765 to 631,426 9565 mRNA_1198: 9566 - Hypothetical Protein, at 631,655 to 633,710 9566

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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627,786 - -1.6
627,872 + -0.3
627,987 + +1.0
628,004 + -0.1
628,200 + +0.5
628,266 + +0.3
628,314 - +0.5
628,325 - +2.5
628,326 + +1.0
628,328 - +1.0
628,332 - -0.0
628,344 - +0.9
628,432 - -0.4
628,448 - -1.2
628,626 + -1.3
628,776 - -0.8
628,785 + +0.8
628,793 - +1.3
629,085 + 9565 mRNA_1197 0.12 +0.5
629,677 + 9565 mRNA_1197 0.34 +0.4
629,850 + 9565 mRNA_1197 0.41 -0.9
630,522 - 9565 mRNA_1197 0.66 +0.4
631,105 - 9565 mRNA_1197 0.88 +1.4
631,247 - +0.8
631,259 + -1.1
631,508 - +1.0
631,666 - +3.8
632,018 + 9566 mRNA_1198 0.18 -0.5

Or see this region's nucleotide sequence