Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1232

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9599 and 9600 are separated by 363 nucleotides9600 and 9601 are separated by 226 nucleotides mRNA_1231: 9599 - K11086 SNRPB, SMB small nuclear ribonucleoprotein B and B', at 709,057 to 710,079 9599 mRNA_1232: 9600 - K12177 COPS3, CSN3 COP9 signalosome complex subunit 3, at 710,443 to 712,961 9600 mRNA_1233: 9601 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 713,188 to 714,152 9601

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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710,572 + +1.7
710,809 + 9600 mRNA_1232 0.15 +1.4
710,843 - 9600 mRNA_1232 0.16 -0.3
710,881 - 9600 mRNA_1232 0.17 +2.9
711,721 - 9600 mRNA_1232 0.51 +0.6
711,729 + 9600 mRNA_1232 0.51 +1.7
712,005 + 9600 mRNA_1232 0.62 +0.5
712,275 - 9600 mRNA_1232 0.73 +2.1
712,669 + 9600 mRNA_1232 0.88 -0.2
713,010 - +1.4
713,053 + -0.7
713,132 + +0.3
713,289 - 9601 mRNA_1233 0.10 -1.2

Or see this region's nucleotide sequence