Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1241

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9608 and 9609 are separated by 516 nucleotides9609 and 9610 are separated by 229 nucleotides mRNA_1240: 9608 - Interpro Protein of unknown function (DUF1275) 0, at 732,640 to 733,855 9608 mRNA_1241: 9609 - K12893 SFRS4_5_6 splicing factor, arginine/serine-rich 4/5/6, at 734,372 to 735,961 9609 mRNA_1242: 9610 - K01110 PTEN phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, at 736,191 to 738,180 9610

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
733,468 + 9608 mRNA_1240 0.68 -0.1
733,597 + 9608 mRNA_1240 0.79 -0.5
733,644 + 9608 mRNA_1240 0.83 +0.6
733,684 - 9608 mRNA_1240 0.86 -1.2
733,756 - -0.4
733,758 - +1.4
733,797 + -1.2
733,809 - -1.4
733,896 + -0.4
733,917 - -0.5
734,060 - +0.5
734,173 - +0.1
734,181 + +1.4
734,384 + +0.0
735,067 - 9609 mRNA_1241 0.44 +1.5
735,255 + 9609 mRNA_1241 0.56 +3.3
735,676 + 9609 mRNA_1241 0.82 -0.1
735,884 - -2.5
735,966 - +1.5
736,091 + +0.0
736,098 + +2.3
736,116 - -0.1
736,121 - -0.1
736,121 - -0.3
736,398 - 9610 mRNA_1242 0.10 +1.7
736,406 - 9610 mRNA_1242 0.11 +1.8
736,406 - 9610 mRNA_1242 0.11 +0.6
736,406 - 9610 mRNA_1242 0.11 +1.3
736,425 - 9610 mRNA_1242 0.12 -0.0
736,433 + 9610 mRNA_1242 0.12 -0.6
736,713 - 9610 mRNA_1242 0.26 +2.8
736,846 - 9610 mRNA_1242 0.33 +0.2
736,954 - 9610 mRNA_1242 0.38 +0.4

Or see this region's nucleotide sequence