Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1263

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9630 and 9631 are separated by 166 nucleotides9631 and 9632 are separated by 471 nucleotides mRNA_1262: 9630 - KOG4781 Uncharacterized conserved protein, at 780,962 to 782,100 9630 mRNA_1263: 9631 - K06130 LYPLA2 lysophospholipase II, at 782,267 to 783,226 9631 mRNA_1264: 9632 - HMMPfam-Mitochondrial ribosomal protein subunit L20-PF12824, at 783,698 to 784,459 9632

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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781,567 - 9630 mRNA_1262 0.53 +1.5
781,776 + 9630 mRNA_1262 0.71 +0.2
781,992 - +1.2
782,011 + +0.2
782,019 + +0.8
782,057 + +2.9
782,108 + -0.1
782,129 - +0.1
782,141 - -0.4
782,148 - -1.3
782,152 - -1.3
782,156 + +2.0
782,156 - +0.2
782,158 + -0.4
782,158 + +0.2
782,170 + +1.9
782,181 - +0.2
782,227 + +1.5
782,265 - -0.7
782,344 - +2.7
782,354 - +1.5
782,909 + 9631 mRNA_1263 0.67 +0.3
783,049 - 9631 mRNA_1263 0.81 +0.3
783,085 - 9631 mRNA_1263 0.85 +0.4
783,098 + 9631 mRNA_1263 0.87 -2.5
783,217 - +0.6
783,363 + -0.7
783,489 - +0.1
783,615 - -2.0
783,625 - +3.7
783,709 - -0.2

Or see this region's nucleotide sequence