Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1295

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9663 and 9664 are separated by 339 nucleotides mRNA_1295: 9663 - Hypothetical Protein, at 855,007 to 856,078 9663 mRNA_1296: 9664 - K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase, at 856,418 to 857,945 9664

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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854,237 - +0.7
854,717 - +1.0
855,280 + 9663 mRNA_1295 0.25 +0.8
855,552 + 9663 mRNA_1295 0.51 +0.1
855,718 + 9663 mRNA_1295 0.66 +0.8
855,979 - +1.9
855,981 + +2.7
855,986 + -3.2
856,141 - +0.0
856,152 + +0.1
856,166 + -0.4
856,293 + +0.5
856,402 + +1.0
856,428 + +2.5
856,430 - +0.5

Or see this region's nucleotide sequence