Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1308

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9676 and 9677 are separated by 752 nucleotides mRNA_1308: 9676 - KOG0342 ATP-dependent RNA helicase pitchoune, at 890,462 to 892,850 9676 mRNA_1309: 9677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 893,603 to 895,450 9677

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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889,473 + +0.9
889,777 + +0.7
889,777 + +0.6
889,786 + -2.4
889,800 + -0.0
889,812 + +1.1
889,814 + +1.8
889,936 - +1.1
890,258 + -0.3
890,371 - +1.8
890,391 - +2.0
890,395 - -0.2
890,400 - -2.4
890,412 - +0.2
890,979 - 9676 mRNA_1308 0.22 -2.0
893,096 - -1.1
893,132 + -1.3

Or see this region's nucleotide sequence