Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1319

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9686 and 9687 are separated by 539 nucleotides mRNA_1318: 9686 - KOG1773 Stress responsive protein, at 917,910 to 918,381 9686 mRNA_1319: 9687 - KOG0404 Thioredoxin reductase, at 918,921 to 919,455 9687

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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918,382 - -0.6
918,522 - -2.1
918,531 + -1.1
919,396 + 9687 mRNA_1319 0.89 -0.2
919,572 + +1.3
919,590 + -0.6
919,613 - +2.3
919,637 + +2.9
919,876 - -0.1
919,888 - +0.5
920,177 - +0.3
920,259 + -0.8
920,261 - +3.5
920,301 - +0.4
920,339 + +0.9

Or see this region's nucleotide sequence