Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1325

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1325: 9693 - KOG1960 Predicted RNA-binding protein, contains KH domains, at 934,914 to 938,027 9693

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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933,927 + +2.0
933,938 - +0.2
933,942 - +0.7
933,984 + -1.1
933,990 - +0.4
934,003 - +2.6
934,284 + +0.9
934,292 - -0.2
934,322 + +0.4
934,378 - -0.6
934,416 - +0.1
934,417 + +0.9
934,701 + +0.5
934,734 + +2.1
934,811 - -1.9
935,144 - +1.5
935,150 + +0.9
935,270 + 9693 mRNA_1325 0.11 +0.0
935,275 - 9693 mRNA_1325 0.12 -0.7
935,279 - 9693 mRNA_1325 0.12 +1.0
935,390 - 9693 mRNA_1325 0.15 -0.5
935,433 - 9693 mRNA_1325 0.17 +0.1
936,305 + 9693 mRNA_1325 0.45 -0.3
936,365 + 9693 mRNA_1325 0.47 -0.2
936,430 - 9693 mRNA_1325 0.49 +1.0
936,605 - 9693 mRNA_1325 0.54 +0.8
936,730 - 9693 mRNA_1325 0.58 +2.3
936,732 + 9693 mRNA_1325 0.58 -0.4
937,097 + 9693 mRNA_1325 0.70 +0.3
937,386 + 9693 mRNA_1325 0.79 +0.0
937,393 + 9693 mRNA_1325 0.80 +0.0
937,498 - 9693 mRNA_1325 0.83 -0.6
937,540 - 9693 mRNA_1325 0.84 +0.8
937,569 - 9693 mRNA_1325 0.85 +2.5
937,635 + 9693 mRNA_1325 0.87 -0.4
937,728 + -0.0
937,741 + +0.2
937,754 - +0.3
937,760 - +0.2
937,763 - -0.4
937,803 + +1.0
937,806 - +0.7
937,832 - +0.3
937,838 - -1.4
937,885 + -0.2
937,898 - +0.6
937,954 - -1.7
938,042 - -2.1
938,046 - -0.4
938,050 - -0.0
938,054 + +1.3
938,058 + +0.6
938,061 - -0.2
938,066 - -0.5
938,073 - +0.7
938,094 - +1.2
938,113 - +0.2
938,116 + -1.1
938,134 + -0.6
938,134 + +0.4
938,136 - -0.5
938,141 - -1.4
938,172 - +1.0
938,177 - -0.6
938,179 - +0.5
938,183 - +1.5
938,186 - +0.8
938,190 - +0.1
938,190 - +0.5
938,190 - +1.2
938,190 - +2.0
938,190 - -0.3

Or see this region's nucleotide sequence