Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1333

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9701 and 9702 are separated by 267 nucleotides mRNA_1333: 9701 - K08286 E2.7.11.- protein-serine/threonine kinase, at 21,280 to 24,099 9701 mRNA_1334: 9702 - HMMPfam-RNA polymerase II transcription elongation factor-PF09816, at 24,367 to 26,303 9702

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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20,649 + +2.1
20,937 + +0.2
21,061 - +0.6
21,077 + -0.5
24,130 - -0.4
24,140 + +0.8
24,279 - -0.1
24,423 + +0.2
24,436 - -0.1
24,447 + +0.6
24,568 - 9702 mRNA_1334 0.10 +0.8
24,881 + 9702 mRNA_1334 0.27 -1.5
24,993 - 9702 mRNA_1334 0.32 -0.4
25,061 - 9702 mRNA_1334 0.36 +0.3

Or see this region's nucleotide sequence