Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1387

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9754 and 9755 are separated by 195 nucleotides9755 and 9756 are separated by 629 nucleotides mRNA_1386: 9754 - K06966 K06966 uncharacterized protein, at 147,599 to 148,550 9754 mRNA_1387: 9755 - BLAST bromodomain-containing protein 8 [Cryptococcus ne..., at 148,746 to 149,519 9755 mRNA_1388: 9756 - K00698 CHS1 chitin synthase, at 150,149 to 154,291 9756

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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148,066 + 9754 mRNA_1386 0.49 +0.2
148,071 - 9754 mRNA_1386 0.50 +0.9
148,205 + 9754 mRNA_1386 0.64 +1.7
148,213 + 9754 mRNA_1386 0.64 +0.4
148,517 - -0.3
148,551 + +0.0
148,799 + -0.6
148,816 + +1.1
148,820 - +1.3
148,831 + 9755 mRNA_1387 0.11 -0.8
148,841 - 9755 mRNA_1387 0.12 +0.1
148,956 - 9755 mRNA_1387 0.27 +0.7
149,117 - 9755 mRNA_1387 0.48 -0.2
149,131 - 9755 mRNA_1387 0.50 +1.3
149,135 + 9755 mRNA_1387 0.50 +0.3
149,137 - 9755 mRNA_1387 0.51 -0.8
149,138 + 9755 mRNA_1387 0.51 +0.5
149,278 - 9755 mRNA_1387 0.69 -1.1
149,404 - 9755 mRNA_1387 0.85 +0.4
149,417 + 9755 mRNA_1387 0.87 -0.6
149,719 + +0.5
149,727 - -1.5
149,739 - -0.6
149,990 + +1.2
150,006 + +0.0
150,097 - -0.5
150,279 + +0.3

Or see this region's nucleotide sequence