Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1400

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9767 and 9768 are separated by 586 nucleotides9768 and 9769 are separated by 121 nucleotides mRNA_1399: 9767 - Hypothetical Protein, at 179,296 to 180,900 9767 mRNA_1400: 9768 - K20360 TBC1D22, GYP1 TBC1 domain family member 2, at 181,487 to 184,184 9768 mRNA_1401: 9769 - Hypothetical Protein, at 184,306 to 185,166 9769

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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180,539 + 9767 mRNA_1399 0.77 +0.7
180,701 + 9767 mRNA_1399 0.88 -0.2
181,106 - +0.8
181,672 - -0.5
181,698 + -0.0
181,728 + -0.6
181,848 - 9768 mRNA_1400 0.13 -0.9
181,854 + 9768 mRNA_1400 0.14 +1.9
181,957 + 9768 mRNA_1400 0.17 +2.0
182,278 - 9768 mRNA_1400 0.29 +0.3
182,315 + 9768 mRNA_1400 0.31 +0.2
182,441 - 9768 mRNA_1400 0.35 +1.4
182,613 + 9768 mRNA_1400 0.42 +1.0
182,835 - 9768 mRNA_1400 0.50 -0.2
182,856 + 9768 mRNA_1400 0.51 +3.3
184,261 + +1.5
184,270 - +0.2
184,320 - -0.1
184,333 + -0.7
184,445 + 9769 mRNA_1401 0.16 -0.4
184,453 + 9769 mRNA_1401 0.17 -0.9
184,459 - 9769 mRNA_1401 0.18 +0.9
184,459 - 9769 mRNA_1401 0.18 -1.1

Or see this region's nucleotide sequence