Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1425

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9793 and 9794 are separated by 301 nucleotides mRNA_1425: 9793 - HMMPfam-Protein of unknown function (DUF4449)-PF14613,SUPERFAMILY--SSF55394, at 253,226 to 256,985 9793 mRNA_1426: 9794 - Hypothetical Protein, at 257,287 to 258,707 9794

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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252,581 + -0.6
252,782 - +0.6
252,866 + +0.2
252,872 + +1.3
252,880 - +0.3
253,009 + -1.3
253,019 - +0.6
253,021 - +0.6
253,021 + -1.0
253,099 - -0.6
253,106 + -0.1
253,129 - +1.5
253,152 + +0.6
253,168 - -1.2
253,170 + -0.9
253,176 - +0.4
253,179 + +2.0
253,179 + +0.1
253,201 + +0.8
253,677 - 9793 mRNA_1425 0.12 +1.7
254,649 - 9793 mRNA_1425 0.38 +1.0
255,149 + 9793 mRNA_1425 0.51 +1.4
255,470 + 9793 mRNA_1425 0.60 -0.6
255,977 - 9793 mRNA_1425 0.73 +2.2
255,993 + 9793 mRNA_1425 0.74 +0.4
256,012 + 9793 mRNA_1425 0.74 +0.9
256,048 + 9793 mRNA_1425 0.75 -0.4
256,111 + 9793 mRNA_1425 0.77 +0.2
256,259 - 9793 mRNA_1425 0.81 -0.6
256,413 - 9793 mRNA_1425 0.85 +1.6
256,440 - 9793 mRNA_1425 0.85 -0.9
256,534 + 9793 mRNA_1425 0.88 +0.3
256,993 - -0.1
257,627 + 9794 mRNA_1426 0.24 -1.0
257,783 + 9794 mRNA_1426 0.35 +1.4

Or see this region's nucleotide sequence