Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1429

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9796 and 9797 are separated by 244 nucleotides9797 and 9798 are separated by 780 nucleotides mRNA_1428: 9796 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 261,983 to 262,469 9796 mRNA_1429: 9797 - HMMPfam-Protein of unknown function (DUF3237)-PF11578, at 262,714 to 263,546 9797 mRNA_1430: 9798 - KOG4205 RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1, at 264,327 to 265,821 9798

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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261,793 + +3.4
262,035 - 9796 mRNA_1428 0.11 +0.1
262,658 + +0.7
262,929 - 9797 mRNA_1429 0.26 -1.6
263,102 + 9797 mRNA_1429 0.47 +0.0
263,287 - 9797 mRNA_1429 0.69 -0.2
263,572 - +1.1
263,624 - -0.1

Or see this region's nucleotide sequence