Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1433

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9800 and 9801 are separated by 450 nucleotides9801 and 9802 are separated by 302 nucleotides mRNA_1432: 9800 - K01653 E2.2.1.6S, ilvH, ilvN acetolactate synthase I/III small subunit, at 267,491 to 268,796 9800 mRNA_1433: 9801 - K17081 PHB2 prohibitin 2, at 269,247 to 270,588 9801 mRNA_1434: 9802 - Hypothetical Protein, at 270,891 to 274,299 9802

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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268,836 - +0.4
268,886 - +2.1
268,899 - +1.9
269,030 + +1.1
269,049 + +2.8
269,467 - 9801 mRNA_1433 0.16 -0.8
269,629 + 9801 mRNA_1433 0.28 -1.2
269,773 - 9801 mRNA_1433 0.39 +0.7
269,894 - 9801 mRNA_1433 0.48 +0.8
270,162 - 9801 mRNA_1433 0.68 -0.0
270,328 + 9801 mRNA_1433 0.81 +0.5
270,330 - 9801 mRNA_1433 0.81 +2.0
270,333 + 9801 mRNA_1433 0.81 +0.6
270,390 + 9801 mRNA_1433 0.85 -0.4
270,484 + -0.4
270,497 + +0.7
270,644 + -0.2
270,650 - +2.0
270,774 - -0.6
270,778 + +0.0
270,927 + +0.4
270,930 + +2.2
270,930 + +1.1
271,071 - -0.1
271,090 - -2.0
271,227 - +0.7

Or see this region's nucleotide sequence