Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1447

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9814 and 9815 are separated by 687 nucleotides mRNA_1446: 9814 - BLAST Mucin-17 [Rhizoctonia solani], at 303,145 to 306,587 9814 mRNA_1447: 9815 - ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044, at 307,275 to 311,482 9815

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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306,550 + -0.3
306,798 + -0.4
307,047 - -0.9
307,059 + +0.5
307,214 + +1.3
307,215 - -0.1
307,518 + +2.6
308,081 + 9815 mRNA_1447 0.19 -0.4
308,361 + 9815 mRNA_1447 0.26 +2.5
308,391 + 9815 mRNA_1447 0.27 +0.7
308,397 + 9815 mRNA_1447 0.27 +0.7
308,518 + 9815 mRNA_1447 0.30 +2.0
308,655 + 9815 mRNA_1447 0.33 +0.3
308,666 + 9815 mRNA_1447 0.33 +0.6
308,815 - 9815 mRNA_1447 0.37 +1.3
308,992 + 9815 mRNA_1447 0.41 +1.2
309,073 - 9815 mRNA_1447 0.43 -0.1
309,825 + 9815 mRNA_1447 0.61 +0.7
310,070 - 9815 mRNA_1447 0.66 -0.0
310,124 + 9815 mRNA_1447 0.68 +0.8
310,255 + 9815 mRNA_1447 0.71 +1.7
310,405 - 9815 mRNA_1447 0.74 +1.7
310,499 - 9815 mRNA_1447 0.77 -0.3
310,679 - 9815 mRNA_1447 0.81 -1.8
310,871 - 9815 mRNA_1447 0.85 +0.1
311,184 - +0.8
311,479 - +0.5
311,498 - +0.9
311,499 + +0.0
311,502 - +0.5
311,517 + +0.5
311,553 - +1.4
311,587 + +2.0
311,605 + +0.7
311,631 + +0.6
311,636 + -0.6
311,662 - +0.3
311,690 + -0.8
311,703 + +0.2
311,707 - +1.0
311,712 - +0.7
311,718 + +0.7
311,729 - +3.8
311,729 - -0.3
311,735 - +0.7
311,736 + +0.3
311,742 + +0.3
311,756 + +0.8
311,889 - +0.5
311,895 + -1.3
312,208 - +0.4
312,333 - +2.5
312,336 + +0.2
312,348 - +1.0

Or see this region's nucleotide sequence