Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1538

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9905 and 9906 are separated by 254 nucleotides9906 and 9907 are separated by 79 nucleotides mRNA_1537: 9905 - K05284 PIGM phosphatidylinositol glycan, class M, at 537,720 to 539,172 9905 mRNA_1538: 9906 - K20307 TRAPPC10, TRS130 trafficking protein particle complex subunit 10, at 539,427 to 544,024 9906 mRNA_1539: 9907 - K13617 PPME1 protein phosphatase methylesterase 1, at 544,104 to 545,858 9907

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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538,679 + 9905 mRNA_1537 0.66 -1.7
539,181 - -0.6
539,181 - -0.0
539,181 - -0.1
539,183 + -1.4
539,186 + -0.5
539,191 - +0.3
539,201 - -0.5
539,203 - -1.3
539,208 - +0.7
539,353 + -1.1
539,359 - -0.6
539,359 - -1.6
543,529 - 9906 mRNA_1538 0.89 +1.2
543,669 - +2.7
544,146 + -2.7
544,421 - 9907 mRNA_1539 0.18 -0.3
544,862 - 9907 mRNA_1539 0.43 +0.8

Or see this region's nucleotide sequence