Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1599

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9966 and 9967 are separated by 407 nucleotides9967 and 9968 are separated by 498 nucleotides mRNA_1598: 9966 - Hypothetical Protein, at 689,711 to 690,052 9966 mRNA_1599: 9967 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 690,460 to 691,819 9967 mRNA_1600: 9968 - K12178 COPS4, CSN4 COP9 signalosome complex subunit 4, at 692,318 to 693,945 9968

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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689,508 + +0.1
689,522 + -0.3
689,565 + -0.0
689,829 + 9966 mRNA_1598 0.35 -1.2
690,286 + +0.6
690,460 - +0.9
690,549 - -0.7
690,568 + -1.7
690,833 - 9967 mRNA_1599 0.27 +1.2
690,877 - 9967 mRNA_1599 0.31 -0.7
690,976 - 9967 mRNA_1599 0.38 +1.2
691,014 - 9967 mRNA_1599 0.41 +1.6
691,153 - 9967 mRNA_1599 0.51 +0.0
691,177 + 9967 mRNA_1599 0.53 -0.5
691,961 + +0.6
692,058 - -0.3
692,091 + +0.2
692,110 + +0.5
692,250 + -0.5
692,383 + +0.4
692,390 + -0.9
692,787 - 9968 mRNA_1600 0.29 +1.1

Or see this region's nucleotide sequence