Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1625

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9992 and 9993 are separated by 295 nucleotides9993 and 9994 are separated by 94 nucleotides mRNA_1624: 9992 - BLAST calcium-transporting ATPase [Pseudozyma hubeiensi..., at 747,802 to 749,738 9992 mRNA_1625: 9993 - Hypothetical Protein, at 750,034 to 750,701 9993 mRNA_1626: 9994 - Hypothetical Protein, at 750,796 to 751,505 9994

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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749,096 - 9992 mRNA_1624 0.67 +1.9
749,756 + +0.2
749,976 - -0.5
750,632 - 9993 mRNA_1625 0.90 +1.7
750,797 - +1.1
750,825 + -0.8
750,992 - 9994 mRNA_1626 0.28 -0.8
750,993 + 9994 mRNA_1626 0.28 +0.5
751,044 + 9994 mRNA_1626 0.35 -0.4
751,155 + 9994 mRNA_1626 0.51 +0.0
751,328 + 9994 mRNA_1626 0.75 +1.2
751,597 - +0.3
751,614 + +1.1

Or see this region's nucleotide sequence